PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000793.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 171aa    MW: 18794.3 Da    PI: 7.9516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000793.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-181061155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s y GVr ++ +g+++AeIrd ++ g  kr++lg+f  ae+Aa a+++a+++++g
  Itr_sc000793.1_g00001.1 10 SNYIGVRKRP-WGKYAAEIRDSTQSG--KRVWLGTFNNAEDAALAYDQAALAMRG 61
                             5699******.**********55444..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.94E-291069No hitNo description
SuperFamilySSF541711.57E-221071IPR016177DNA-binding domain
SMARTSM003802.3E-341175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-301169IPR001471AP2/ERF domain
PfamPF008471.4E-121161IPR001471AP2/ERF domain
PROSITE profilePS5103221.5491169IPR001471AP2/ERF domain
PRINTSPR003679.3E-121223IPR001471AP2/ERF domain
PRINTSPR003679.3E-125171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEAHTSTKTS NYIGVRKRPW GKYAAEIRDS TQSGKRVWLG TFNNAEDAAL AYDQAALAMR  60
GTSACLNFPP EVVRELLEKV DCKEGMSVAA ALKEKHRKRT RRGKGNSPSC KEAEEEGNNG  120
VLVFEDLGSD LLDELLSVTS SSCMFSPGPV TLADHKEINQ LRLPIADRLK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-26772166ATERF1
3gcc_A6e-26772166ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464424.11e-52PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8LDC85e-38ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLM1B0S32e-50M1B0S3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000344896e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.13e-25ethylene-responsive element binding factor 15